Lectin XN-IL

Xenorhabdus nematophila lectin specific to hyaluronan and low/medium-sulfated heparan sulfate.

Prices

Product number Product Form Package size In stock Lot number Price
GL-011 XN-IL lectin lyophilized 1 mg - - -
5 mg - - -
5x 1 mg - - -
10 mg - - -
bulk orders
Discounts may be applied for bulk orders. Biotinylated or fluorescently labeled (DyLight) variants can be provided upon request. Contact us at contact@4glyco.cz for prices and availability of those products.

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This product is for R&D use only. Not for human or animal use.

Basic information:

Name: XN-IL
Organism: Xenorhabdus nematophila
Expression host: Escherichia coli
Tags: no
Molar mass (monomer): 13692.6 Da
Extinction coefficient: 26930 M-1 cm-1
Oligomeric state: tetramer
PDB code: 9T91 (with HA tetrasaccharide)

Protein sequence:
MYDWSGTVPAKLEQGQPTGLILKAGDVISIVAKGWVKYGYPDNYWAAPQGTLPKKPTLNDTLIAKIGNKTYGIGNGVLHKTVPVDGELILLFNDKPGSFGDNSGEFHVVIKIESRYDPDYLEEII

A 1.8 Å X-ray structure of XN-IL lectin from Xenorhabdus nematophila with bound heparosan trisaccharide. XN-IL is in the tetrameric form, calcium ions are shown in orange.

Carbohydrate specificity:

XN-IL binds hyaluronan and low- to medium-sulfated heparan sulfate ligands. In solution, the interaction leads to the precipitation of these GAGs. The binding occurs over a broad pH range (4-9) and is not significantly affected by the ionic strength of the buffer. The interaction is reversible, and the addition of EDTA disrupts the XN-IL/GAG complex. In contrast, XN-IL shows negligible binding to monosaccharides; lactose (disaccharide) is bound only weakly. XN-IL does not bind other glycosaminoglycans (chondroitin sulfate, high-sulfated heparan sulfate, heparin, keratan sulfate, dermatan sulfate) [1].

Ion dependency: Ca2+-dependent
Glycan array data: download
GAG array data: download

Stability:

The protein exhibits high thermal stability across a variety of buffers (pH range 4-10, sodium chloride concentration up to 1 M). As calcium ions in the binding sites are required for lectin activity, the addition of 0.1-0.5 mM CaCl2 to the working buffer is recommended. EDTA and other chelating agents should be avoided as they remove Ca2+ ion from the binding site and result in loss of lectin activity. After reconstitution in neutral pH buffers, the protein remains stable at 4 °C for weeks. The addition of sodium azide (0.02%) is recommended to prevent microbial growth.

Tm = 90 °C (nanoDSF, 0.1 M Hepes, pH 7.0)

Applications and biological effects:

XN-IL can be used in various applications, including lectin blotting, fluorescence microscopy, flow cytometry, and lectin histochemistry. 

References:

  1. Korsák et al, Carbohydr Polym, 2026, doi: 10.1016/j.carbpol.2026.125557

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